One chromosome settles the question of sex, and it comes from the father. A son inherits a Y from his father and a single X from his mother; the father's X goes only to his daughters. The SRY gene on that Y switches on male development within the first weeks of pregnancy.
Everything about his face, though, is
polygenic — face shape, nose, lips and jaw each draw on dozens of variants from both sides, so a son can favour his mother's features as readily as his father's. What changes is the timing. Testosterone through puberty lengthens the jaw and heavies the brow, which is why a boy's resemblance to his father often reads more strongly at sixteen than it did at six months.
Height is where the two parents combine most predictably. The mid-parental method used in paediatric growth checks adds about 13 cm (5 inches) to the mother's height and averages that with the father's; most boys land within roughly 10 cm either side of the result. It gives you a range, not a number, and nutrition, health and the timing of puberty all move it.
His single X has one further consequence. Anything recessive on that chromosome has no second copy to mask it, which is why
red-green colour vision deficiency reaches roughly 1 in 12 men but only about 1 in 200 women — and why it travels down the mother's line.